001431545 000__ 03903cam\a2200529\i\4500 001431545 001__ 1431545 001431545 003__ OCoLC 001431545 005__ 20230308003241.0 001431545 006__ m\\\\\o\\d\\\\\\\\ 001431545 007__ cr\un\nnnunnun 001431545 008__ 221007s2022\\\\sz\a\\\\o\\\\\001\0\eng\d 001431545 019__ $$a1346530591$$a1350581610 001431545 020__ $$a9783030763947$$q(electronic bk.) 001431545 020__ $$a3030763943$$q(electronic bk.) 001431545 020__ $$z9783030763930$$q(print) 001431545 020__ $$z3030763935 001431545 0247_ $$a10.1007/978-3-030-76394-7$$2doi 001431545 035__ $$aSP(OCoLC)1346984629 001431545 040__ $$aGW5XE$$beng$$erda$$epn$$cGW5XE$$dYDX$$dOCLCF$$dEBLCP$$dOCLCQ 001431545 049__ $$aISEA 001431545 050_4 $$aQH207 001431545 08204 $$a570.28/2$$223/eng/20221007 001431545 24500 $$aBioimage data analysis workflows -- advanced components and methods /$$cKota Miura, Nataša Sladoje, editors. 001431545 264_1 $$aCham :$$bSpringer,$$c2022. 001431545 300__ $$a1 online resource (x, 212 pages) :$$bcolor illustrations. 001431545 336__ $$atext$$btxt$$2rdacontent 001431545 337__ $$acomputer$$bc$$2rdamedia 001431545 338__ $$aonline resource$$bcr$$2rdacarrier 001431545 4901_ $$aLearning materials in biosciences,$$x2509-6133 001431545 500__ $$aIncludes index. 001431545 5050_ $$aIntroduction -- Batch Processing Methods in ImageJ -- Python: Data Handling, Analysis and Plotting -- Building a Bioimage Analysis Workflow Using Deep Learning -- GPU-Accelerating ImageJ Macro Image Processing Workflows Using CLIJ -- How to Do the Deconstruction of Bioimage Analysis Workflows: A Case Study with SurfCut -- i.2.i. with the (Fruit) Fly: Quantifying Position Effect Variegation in Drosophila Melanogaster -- A MATLAB Pipeline for Spatiotemporal Quantification of Monolayer Cell Migration. 001431545 5060_ $$aOpen access.$$5GW5XE 001431545 520__ $$aThis open access textbook aims at providing detailed explanations on how to design and construct image analysis workflows to successfully conduct bioimage analysis. Addressing the main challenges in image data analysis, where acquisition by powerful imaging devices results in very large amounts of collected image data, the book discusses techniques relying on batch and GPU programming, as well as on powerful deep learning-based algorithms. In addition, downstream data processing techniques are introduced, such as Python libraries for data organization, plotting, and visualizations. Finally, by studying the way individual unique ideas are implemented in the workflows, readers are carefully guided through how the parameters driving biological systems are revealed by analyzing image data. These studies include segmentation of plant tissue epidermis, analysis of the spatial pattern of the eye development in fruit flies, and the analysis of collective cell migration dynamics. The presented content extends the Bioimage Data Analysis Workflows textbook (Miura, Sladoje, 2020), published in this same series, with new contributions and advanced material, while preserving the well-appreciated pedagogical approach adopted and promoted during the training schools for bioimage analysis organized within NEUBIAS – the Network of European Bioimage Analysts. This textbook is intended for advanced students in various fields of the life sciences and biomedicine, as well as staff scientists and faculty members who conduct regular quantitative analyses of microscopy images. 001431545 588__ $$aOnline resource; title from PDF title page (SpringerLink, viewed October 7, 2022). 001431545 650_0 $$aMicroscopy$$xTechnique. 001431545 650_0 $$aElectron microscopy. 001431545 655_0 $$aElectronic books. 001431545 7001_ $$aMiura, Kota,$$eeditor. 001431545 7001_ $$aSladoje, Nataša,$$eeditor. 001431545 77608 $$iPrint version: $$z3030763935$$z9783030763930$$w(OCoLC)1246350727 001431545 830_0 $$aLearning materials in biosciences,$$x2509-6133 001431545 852__ $$bebk 001431545 85640 $$3Springer Nature$$uhttps://link.springer.com/10.1007/978-3-030-76394-7$$zOnline Access$$91397441.2 001431545 909CO $$ooai:library.usi.edu:1431545$$pGLOBAL_SET 001431545 980__ $$aBIB 001431545 980__ $$aEBOOK 001431545 982__ $$aEbook 001431545 983__ $$aOnline 001431545 994__ $$a92$$bISE