Evolution
On the Comparison of Bacteriophage Populations
Syntenic Dimensions of Genomic Evolution
Phylogenetics
Fast and Accurate Branch Support Calculation for Distance-based Phylogenetic Placements
The Sackin Index of Simplex Networks
Phylogenetic Placement Problem: A Hyperbolic Embedding Approach
Phylogenetic Network Dissimilarity Measures That Take Branch Lengths Into Account
Homology and Reconciliation
The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes
Reconciliation with Segmental Duplication, Transfer, Loss and Gain
Quantifying Hierarchical Conflicts in Homology Statements
On Partial Gene Transfer and its Impact on Gene Tree Reconstruction
Genome Rearrangements
Sorting by k-Cuts on Signed Permutations
A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions
Chromothripsis Rearrangements Are Informed by 3D Genome Organization
Metagenomics
Using Computational Synthetic Biology Tools to Modulate Gene Expression within a Microbiome
Metagenomics Binning of Long Reads Using Read-Overlap Graphs
A Mixed Integer Linear Programming Algorithm for Plasmid Binning
Genomic Sequencing
Benchmarking Penalized Regression Methods in Machine Learning for Single Cell RNA Sequencing Data
Deciphering the Tissue-speci c Regulatory Role of Intronless Genes Across Cancers.