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Table of Contents
Intro
Acknowledgements
Contents
1: Introduction to Coral Reef Conservation and Restoration in the Omics Age
References
2: Incorporating Genetic Measures of Connectivity and Adaptation in Marine Spatial Planning for Corals
2.1 Introduction
2.2 Measuring Coral Connectivity with Genetics
2.2.1 Dispersal Estimation for the Cnidarian Host
2.2.2 Caveats and Best Practice for Estimating Host Dispersal
Text Box 2.1 Cryptic Diversity, Hybridization, and Habitat Differentiation
2.2.3 Emerging Insights on Symbiont Connectivity
2.2.4 Coral Host and Symbiont Genetic Connectivity: Summary and Future Directions
2.3 Uncovering the Geography of Adaptive Variation
2.4 Incorporating Coral Connectivity and Adaptive Diversity in Spatial Planning and Management
2.4.1 Coral Reef Spatial Planning: An Overview
2.4.2 Incorporating Connectivity into Marine Spatial Planning
2.4.3 Possible Future Pathways to Spatial Planning with Adaptation
2.5 Tackling Challenges when Using Genetic Connectivity and Adaptation in Spatial Planning
2.5.1 Challenges in Integrating Connectivity and Adaptation in Spatial Planning
2.5.2 Possible Surrogates for Connectivity and Adaptation
2.6 Conclusions and Future Directions
References
3: Maximizing Genetic Diversity in Coral Restoration Projects
3.1 Setting Goals and Benchmarks
3.2 Determining Genotypic and Genetic Diversity of Donor Colonies
3.3 Determining Genotypic and Genetic Diversity of Associated Symbiodiniaceae
3.4 Optimizing Adaptation Potential of Restored Populations
Box 3.1 Breeding Strategies and Steps to Achieve Larval-based Coral Restoration
3.5 Loss of Genetic Diversity due to Senescence of Genets in Declining Wild Populations
3.6 Loss of Genetic Diversity over the Course of Development in Larval Cultures
3.6.1 Limited Genotypic Diversity in Spawn Collections
3.6.2 Uneven Genet Contribution to Batch Fertilization Cultures
3.6.3 Genet-Specific Underperformance During Embryogenesis, Larval Development, and Metamorphosis
3.6.4 Genet-Specific Underperformance on the Reef
3.6.5 Case Study: Laboratory-Bred Acropora palmata Population on Curaçao
3.7 Use of Assisted Gene Flow
3.8 Selective Breeding and Genetic Diversity
3.9 The Road to Genetic Management Plans
3.10 Summary
References
4: Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming
4.1 Detecting Adaptive Genetic Variation among and within Populations
4.1.1 Phenotypic Approaches
4.1.2 Genomic Approaches
4.2 Monitoring and Predicting Adaptive Responses
4.2.1 Monitoring Approaches
4.2.2 Predictive Models
4.3 Application of Adaptive Genetic Variation to Conservation and Management
4.4 Summary and Conclusions
References
5: Selective Breeding to Enhance the Adaptive Potential of Corals
5.1 Introduction
5.2 Selective Breeding
Acknowledgements
Contents
1: Introduction to Coral Reef Conservation and Restoration in the Omics Age
References
2: Incorporating Genetic Measures of Connectivity and Adaptation in Marine Spatial Planning for Corals
2.1 Introduction
2.2 Measuring Coral Connectivity with Genetics
2.2.1 Dispersal Estimation for the Cnidarian Host
2.2.2 Caveats and Best Practice for Estimating Host Dispersal
Text Box 2.1 Cryptic Diversity, Hybridization, and Habitat Differentiation
2.2.3 Emerging Insights on Symbiont Connectivity
2.2.4 Coral Host and Symbiont Genetic Connectivity: Summary and Future Directions
2.3 Uncovering the Geography of Adaptive Variation
2.4 Incorporating Coral Connectivity and Adaptive Diversity in Spatial Planning and Management
2.4.1 Coral Reef Spatial Planning: An Overview
2.4.2 Incorporating Connectivity into Marine Spatial Planning
2.4.3 Possible Future Pathways to Spatial Planning with Adaptation
2.5 Tackling Challenges when Using Genetic Connectivity and Adaptation in Spatial Planning
2.5.1 Challenges in Integrating Connectivity and Adaptation in Spatial Planning
2.5.2 Possible Surrogates for Connectivity and Adaptation
2.6 Conclusions and Future Directions
References
3: Maximizing Genetic Diversity in Coral Restoration Projects
3.1 Setting Goals and Benchmarks
3.2 Determining Genotypic and Genetic Diversity of Donor Colonies
3.3 Determining Genotypic and Genetic Diversity of Associated Symbiodiniaceae
3.4 Optimizing Adaptation Potential of Restored Populations
Box 3.1 Breeding Strategies and Steps to Achieve Larval-based Coral Restoration
3.5 Loss of Genetic Diversity due to Senescence of Genets in Declining Wild Populations
3.6 Loss of Genetic Diversity over the Course of Development in Larval Cultures
3.6.1 Limited Genotypic Diversity in Spawn Collections
3.6.2 Uneven Genet Contribution to Batch Fertilization Cultures
3.6.3 Genet-Specific Underperformance During Embryogenesis, Larval Development, and Metamorphosis
3.6.4 Genet-Specific Underperformance on the Reef
3.6.5 Case Study: Laboratory-Bred Acropora palmata Population on Curaçao
3.7 Use of Assisted Gene Flow
3.8 Selective Breeding and Genetic Diversity
3.9 The Road to Genetic Management Plans
3.10 Summary
References
4: Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming
4.1 Detecting Adaptive Genetic Variation among and within Populations
4.1.1 Phenotypic Approaches
4.1.2 Genomic Approaches
4.2 Monitoring and Predicting Adaptive Responses
4.2.1 Monitoring Approaches
4.2.2 Predictive Models
4.3 Application of Adaptive Genetic Variation to Conservation and Management
4.4 Summary and Conclusions
References
5: Selective Breeding to Enhance the Adaptive Potential of Corals
5.1 Introduction
5.2 Selective Breeding