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Table of Contents
Preface
Part I Single-cell Analysis
Computational and statistical methods for single-cell RNA sequencing data
Pre-processing, dimension reduction, and clustering for single-cell RNA-seq data
Integrative analyses of single-cell multi-omics data: a review from a statistical perspective
Approaches to marker gene identification from single-cell RNA-sequencing data
Model-based clustering of single-cell omics data
Deep learning methods for single cell omics data
Part II Network Analysis
Probabilistic Graphical Models for Gene Regulatory Networks
Additive conditional independence for large and complex biological structures
Integration of Boolean and Bayesian Networks
Computational methods for identifying microRNA-gene regulatory modules
Causal inference in biostatistics
Bayesian Balance Mediation Analysis in Microbiome Studies
Part III Systems Biology
Identifying genetic loci associated with complex trait variability
Cell Type Specific Analysis for Gene Expression and DNA Methylation
Recent development of computational methods in the field of epitranscriptomics
Estimation of Tumor Immune Signatures from Transcriptomics Data
Cross-Linking Mass Spectrometry Data Analysis
Cis-regulatory Element Frequency Modules and their Phase Transition across Hominidae
Improving tip-dating and rooting a viral phylogeny by modeling evolutionary rate as a function of time.
Part I Single-cell Analysis
Computational and statistical methods for single-cell RNA sequencing data
Pre-processing, dimension reduction, and clustering for single-cell RNA-seq data
Integrative analyses of single-cell multi-omics data: a review from a statistical perspective
Approaches to marker gene identification from single-cell RNA-sequencing data
Model-based clustering of single-cell omics data
Deep learning methods for single cell omics data
Part II Network Analysis
Probabilistic Graphical Models for Gene Regulatory Networks
Additive conditional independence for large and complex biological structures
Integration of Boolean and Bayesian Networks
Computational methods for identifying microRNA-gene regulatory modules
Causal inference in biostatistics
Bayesian Balance Mediation Analysis in Microbiome Studies
Part III Systems Biology
Identifying genetic loci associated with complex trait variability
Cell Type Specific Analysis for Gene Expression and DNA Methylation
Recent development of computational methods in the field of epitranscriptomics
Estimation of Tumor Immune Signatures from Transcriptomics Data
Cross-Linking Mass Spectrometry Data Analysis
Cis-regulatory Element Frequency Modules and their Phase Transition across Hominidae
Improving tip-dating and rooting a viral phylogeny by modeling evolutionary rate as a function of time.