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Table of Contents
Intro
Preface
Contents
Editors and Contributors
1: Soil-Borne Viruses: Outlook on Community and Recent Advances in Detection
1.1 Introduction
1.2 Transmission of Soil-Borne Viruses (SBVs)
1.2.1 Chytrid Fungi
1.2.1.1 Mechanism of Transmission.
1.2.2 Plasmodiophorids
1.2.2.1 Life Cycle
1.2.2.2 Plasmodiophorid-Vectored Viruses
1.3 Nematodes
1.3.1 Transmission of Viruses by Nematodes
1.3.1.1 Trichodorid-Transmitted Viruses
1.3.1.2 Longidorid-Transmitted Viruses
1.4 Detection of Soil-Borne Viruses (SBVs)
1.5 Management of SBVs
1.6 Conclusion
2.4.1.4 Capture Probe Design
2.4.1.5 Target Preparation
2.4.1.6 Signal Amplification
2.4.1.7 Hybridization, Washing, and Scanning of Arrays
2.4.2 Novel Formats and Nonplanar Arrays
2.5 Precision Metabolism for Plant Pathogens
2.6 Artificial Intelligence-Based Methods for Plant Disease Detection
2.6.1 Supervised Learning
2.6.2 Unsupervised Learning
2.6.3 Semi-Supervised Learning
2.6.4 Reinforcement Learning
2.7 Conclusion
References
3: Emergent Tools and Techniques in Diagnosis of Soil-Borne Phytopathogens
3.1 Introduction
3.2 Advanced Techniques for Diagnosis of Soil-Borne Phytopathogens
3.2.1 Nucleic Acid-Based Diagnostic Techniques
3.2.1.1 Multiplex PCR
3.2.1.2 Real-Time PCR
3.2.1.3 Magnetic Capture Hybridization PCR
3.2.1.4 End-Point PCR
3.2.1.5 Nested PCR
3.2.1.6 BIO-PCR
3.3 DNA/RNA Probe-Based Assays-In Situ Hybridization
3.3.1 Fluorescent In Situ Hybridization
3.4 Next-Generation Sequencing
3.5 DNA Fingerprinting
3.5.1 PCR-Restriction Fragment Length Polymorphism (RFLP)
3.5.2 Random Amplified Polymorphic DNA (RAPD)
3.5.3 Amplified Fragment Length Polymorphism (AFLP)
3.5.4 Simple Sequence Repeats (SSR)
3.6 Protein-Based Approach
3.6.1 Elisa
3.6.2 Lateral Flow Devices
3.7 Multi-omics Approaches for Plant Disease Diagnosis
3.7.1 Genomic Approaches
3.7.2 Transcriptomics Approaches
3.7.3 Proteomic Approaches
3.7.4 Metabolomic Approaches
3.7.5 Metallomic Approaches
3.7.6 Databases and Software Tools for Multi-omics Study
3.8 Conclusion
3.9 Future Prospective
References
4: Diagnosis and Detection of Soil-Borne Fungal Phytopathogens in Major Crops
4.1 Introduction
Preface
Contents
Editors and Contributors
1: Soil-Borne Viruses: Outlook on Community and Recent Advances in Detection
1.1 Introduction
1.2 Transmission of Soil-Borne Viruses (SBVs)
1.2.1 Chytrid Fungi
1.2.1.1 Mechanism of Transmission.
1.2.2 Plasmodiophorids
1.2.2.1 Life Cycle
1.2.2.2 Plasmodiophorid-Vectored Viruses
1.3 Nematodes
1.3.1 Transmission of Viruses by Nematodes
1.3.1.1 Trichodorid-Transmitted Viruses
1.3.1.2 Longidorid-Transmitted Viruses
1.4 Detection of Soil-Borne Viruses (SBVs)
1.5 Management of SBVs
1.6 Conclusion
2.4.1.4 Capture Probe Design
2.4.1.5 Target Preparation
2.4.1.6 Signal Amplification
2.4.1.7 Hybridization, Washing, and Scanning of Arrays
2.4.2 Novel Formats and Nonplanar Arrays
2.5 Precision Metabolism for Plant Pathogens
2.6 Artificial Intelligence-Based Methods for Plant Disease Detection
2.6.1 Supervised Learning
2.6.2 Unsupervised Learning
2.6.3 Semi-Supervised Learning
2.6.4 Reinforcement Learning
2.7 Conclusion
References
3: Emergent Tools and Techniques in Diagnosis of Soil-Borne Phytopathogens
3.1 Introduction
3.2 Advanced Techniques for Diagnosis of Soil-Borne Phytopathogens
3.2.1 Nucleic Acid-Based Diagnostic Techniques
3.2.1.1 Multiplex PCR
3.2.1.2 Real-Time PCR
3.2.1.3 Magnetic Capture Hybridization PCR
3.2.1.4 End-Point PCR
3.2.1.5 Nested PCR
3.2.1.6 BIO-PCR
3.3 DNA/RNA Probe-Based Assays-In Situ Hybridization
3.3.1 Fluorescent In Situ Hybridization
3.4 Next-Generation Sequencing
3.5 DNA Fingerprinting
3.5.1 PCR-Restriction Fragment Length Polymorphism (RFLP)
3.5.2 Random Amplified Polymorphic DNA (RAPD)
3.5.3 Amplified Fragment Length Polymorphism (AFLP)
3.5.4 Simple Sequence Repeats (SSR)
3.6 Protein-Based Approach
3.6.1 Elisa
3.6.2 Lateral Flow Devices
3.7 Multi-omics Approaches for Plant Disease Diagnosis
3.7.1 Genomic Approaches
3.7.2 Transcriptomics Approaches
3.7.3 Proteomic Approaches
3.7.4 Metabolomic Approaches
3.7.5 Metallomic Approaches
3.7.6 Databases and Software Tools for Multi-omics Study
3.8 Conclusion
3.9 Future Prospective
References
4: Diagnosis and Detection of Soil-Borne Fungal Phytopathogens in Major Crops
4.1 Introduction