@article{725340, recid = {725340}, author = {Xu, Jinbo, and Wang, Sheng, and Ma, Jianzhu,}, title = {Protein homology detection through alignment of Markov random fields using MRFalign / [electronic resource] :}, pages = {1 online resource (viii, 51 pages) :}, abstract = {This work covers sequence-based protein homology detection, a fundamental and challenging bioinformatics problem with a variety of real-world applications. The text first surveys a few popular homology detection methods, such as Position-Specific Scoring Matrix (PSSM) and Hidden Markov Model (HMM) based methods, and then describes a novel Markov Random Fields (MRF) based method developed by the authors. MRF-based methods are much more sensitive than HMM- and PSSM-based methods for remote homolog detection and fold recognition, as MRFs can model long-range residue-residue interaction. The text also describes the installation, usage and result interpretation of programs implementing the MRF-based method.}, url = {http://library.usi.edu/record/725340}, doi = {https://doi.org/10.1007/978-3-319-14914-1}, }