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A practical guide to using glycomics databases / Kiyoko F. Aoki-Kinoshita, editor.

Aoki-Kinoshita, Kiyoko F., editor.
2017
QP702.G577
Available Online
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Title
A practical guide to using glycomics databases / Kiyoko F. Aoki-Kinoshita, editor.
ISBN
9784431564546 (electronic book)
4431564543 (electronic book)
9784431564522
4431564527
DOI
https://doi.org/10.1007/978-4-431-56454-6
Published
Japan : Springer, 2017.
Copyright
©2017
Language
English
Description
1 online resource (362 pages) : color illustrations.
Item Number
10.1007/978-4-431-56454-6 doi
Call Number
QP702.G577
Dewey Decimal Classification
572.56
Summary
This book provides glycoscientists with a handbook of useful databases that can be applied to glycoscience research. Although many databases are now publicly available, one of the hurdles for their users is the learning curve required to effectively utilize those databases. Therefore, this book not only describes the existing databases, but also provides tips on how to obtain the target data. That is, because many databases provide a variety of data that could be obtained from different perspectives, each chapter provides users with potential biological questions that can be answered by a particular database and step-by-step instructions, with figures, on how to obtain that data. Troubleshooting tips are also provided to aid users encountering problems that can be predicted when using these databases. Moreover, contact information for each database is provided in case unexpected issues arise.
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Access limited to authorized users.
Digital File Characteristics
text file PDF
Source of Description
Description based on print version record.
Added Author
Aoki-Kinoshita, Kiyoko F., editor.
Available in Other Form
Print version: 9784431564522
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Preface
Part I Introduction
Chapter1 Introduction
Chapter2 Development of Carbohydrate Nomenclature and Representation
Part II Monosaccharide and glycan structures
Chapter 3 Translation and validation of carbohydrate residue names with MonosaccharideDB routines
Chapter4 Using GlyTouCan version 1.0: The first international glycan structure repository
Chapter5 CARBOHYDRATE STRUCTURE DATABASE (CSDB)
examples of usage
Part III Glyco-related genes and proteins
Chapter6 The CAZy Database / The Carbohydrate-Active Enzyme (CAZy) database: principles and usage guidelines
Chapter7 Glyco3D: A Suite of Inter-linked Databases of 3D Structures of Complex Carbohydrates, Lectins, Antibodies and Glycosyltransferases
Chapter8 GlycoGene Database (GGDB) on the Semantic Web
Chapter9 KEGG GLYCAN Database
Part IV Glycoproteomics data
Chapter10 Exploring the UniCarbKB Database
Chapter11 GlycoProtDB -A database of glycoproteins mapped with actual glycosylation sites identified by mass spectrometry
Part V Glycan interactions
Chapter12 GlycoEpitope
Chapter13 SugarBindDB
Chapter14 PAConto
RDF representation of PACDB data and Ontology of Infectious Diseases known to be related to Glycan Binding
Part VI Glycan data analysis
Chapter15 RINGS: a web resource of tools for analyzing glycomics data
Chapter16 Glycan data retrieval and analysis using GLYCOSCIENCES.de applications
Chapter17 Glycobiology meets the Semantic Web.

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