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Table of Contents
Allostery and Quaternary Structure
Analysis of Damaged DNA
Artificial Chromosomes
Artificial Endonucleases for Genome Editing
Bacterial DNA Replicases
Bacteriophage and Viral Cloning Vectors
Base Intercalation
Bioactivation of Carcinogens
Bioinorganic Chemistry
Blue/White Selection
Characteristics of Enzymes and Cloning Vectors Used to Create Recombinant DNA
Chemical Biology of DNA Replication
Chemical Denaturation
Chemical Reaction Kinetics: Mathematical Underpinnings
Chromatin Remodeling during Homologous Recombination Repair in Saccharomyces Cerevisiae
Cis-Regulation of Eukaryotic Transcription
Classic Approaches to sequence determination
Classical and Alternative End Joining
Cloning Vector Compatibility
Computational methods in epigenetic research
Conjugative Transfer Systems and Classifying Plasmid Genomes
Conservative Site-specific Recombination
Control of Initiation in E.coli
Co-Transcriptional mRNA Processing in Eukaryotes
Crosslinking
Cycling of the Lagging Strand Replicase During Okazaki Fragment Synthesis
Depurination
Differential Equations and Chemical Master Equation Models for Gene Regulatory Networks
Direct Enzymatic Reversal of DNA Damage
Division of Labor
DNA Damage as a Therapeutic Strategy
DNA Damage by Endogenous Chemicals
DNA Methylation and Cancer
DNA Polymerase III Structure
DNA Repair
DNA Repair Polymerases
DNA Replication
DNA Topology and Topoisomerases
DnaA, DnaB, DnaC
DnaX Complex Composition and Assembly Within Cells
Double-strand Break Repair
Effects of adducts on Tm
Equilibria and Bifurcations in the Molecular Biosciences
Eukaryotic DNA Replicases
Evolution of Gene Regulatory Networks
Evolution of Plant Genomes
Exocyclic Adducts
Experimental Assessment of Secondary Structure by Circular Dichroism
Exploring Nuclear Lamin?Chromatin Interactions and Their Signalling Cascades
Expression Assessment
Fatty Acid Metabolism
Forces Maintaining the Stability of Tertiary Structure
Frequency of DNA Damage
Gene Regulation
Genes and Genomes: Structure
Genomic Imprinting
Genomic Imprinting in Mammals: Memories of Generations Past
Genomic Sequence and Structural Diversity in Plants
Genomic Signature Analysis to Predict Plasmid Host Range
Golgi Apparatus
Gyrase and Topoisomerase IV as Targets for Antibacterial Drugs
HDAC Inhibitors Entinostat and Suberoylanilide Hydroxamic Acid (SAHA): The Ray of Hope for Cancer Therapy
Helicase and Primase Interactions with Replisome Components and Accessory Factors
Helicase Mechanism of Action
Hereditary Breast and Ovarian Cancer and Poly(ADP-ribose) Polymerase Inhibition
Homologous Recombination in Lesion Bypass
Hydrolytic, Deamination, and Rearrangement Reactions of DNA Adducts
Immunology and the Immune Response
In Silico Approaches Towards Safe Targetting of Class I Histone Deacetylases
Inflammation and Host Response to Infection
Innate and Regulatory B cells
Innate Immunity
Ion Channels and Transporters
Kinetics of DNA Damage
Large, Theta-replicating Plasmids
Long-Term Genetic Silencing at Centromere and Telomeres
Mammalian Sugar Transporters
Many Bacteria Use a Special Mutagenic Pol III in Place of Pol V
Mass Spectrometry Approaches
Mathematical Modelling of Plasmid Dynamics
Mathematical Models in the Sciences
Mathematics of Fitting Scientific Data
Mechanism of Initiation Complex Formation
Mechanism of PCNA loading by RFC
Mechanisms of DNA Recombination
Meiotic Recombination
Metamobilomics ? The Plasmid Metagenome of Natural Environments
Methods for Plant Genome Annotation
Mismatch Repair
Mitochondrial Genomes
Mitochondrial Genomes in Alveolates
Mitochondrial Genomes in Amoebozoa
Mitochondrial Genomes in Fungi
Mitochondrial Genomes in Invertebrate Animals
Mitochondrial Genomes in Land Plants
Mitochondrial Genomes in Unicellular Relatives of Animals
Mitochondrial Genomes in Vertebrate Animals
Mitochondrial Genomes of Chromists (Stramenopiles, Haptophytes and Cryptophytes)
Mitochondrial Genomes of Excavata
Mitochondrial Genomes of Green, Red and Glaucophyte Algae
Mobile DNA: Mechanisms, Utility, and Consequences
Modelling Plasmid Regulatory Systems
Modes of Base Pairing
mRNA localization and localized translation
Naming and Annotation of plasmids
Natural Products that Damage DNA
NMR Approaches to Determine Protein Structure
NMR Basis For Biomolecular Structure (Theory)
Nucleotide Excision Repair
Obtaining Crystals
Oxidative Damage
Pattern Recognition Receptors: Evolution, Redundancy, and Cross Talk
PCNA Structure and Interactions with Partner Proteins
Peptide Pheromones and their Protein Receptors: Cellular Signaling in Gram-positive Bacteria
Phagocytosis
Plant Genome Sequencing Methods
Plant Genomes: From Sequence to Function Across Evolutionary Time
Plant Transposable Elements: Beyond Insertions and Interruptions
Plasmid Cloning Vectors
Plasmid Genomes, Introduction to
Plasmid Incompatibility
Plasmids as Secondary Chromosomes
Polyglutamine Folding Diseases
Polymerase Chain Reaction
Practical Screening for DNA Damage
Predictions from Sequence
Primary Structure
Prokaryotic Gene Regulation by Sigma Factors and RNA Polymerase
Prokaryotic Gene Regulation by Small RNAs
Protein Domain Structure Evolution
Rad51 and Dmc1 Recombinases
Reactive Oxygen Species
Recombination: Mechanisms, Pathways, and Applications
Recombineering
Regulation of cytoplasmic mRNA
Regulation of DSB Repair by Cell-cycle Signaling and the DNA Damage Response
Regulation of Genetic Element Mobility
Relevance of DNA Damage to Cancer
Repeating Sequences in Proteins: Their Identification and Structural/Functional Implications
Replication Origin of E. coli and the Mechanism of Initiation
Replicative DNA Helicases and Primases
Resolution of Inflammation
Restriction Endonucleases
RNA Interference
RNA Quality Control
RNA-induced chromatin remodeling
Role of Chromatin Remodeling and DNA Modification in Transcriptional Regulation
Roles of Post-translational Modifications in DNA Double Strand Break Repair
Rolling-circle Replicating Plasmids
Secondary Structure
Selection with Antibiotics
Selectivity of Chemicals for DNA Damage
Sequence Selectivity of DNA Damage
Signal Recognition in Lower Organisms: Light-Induced Control of Cell Movement in the Ciliates Blepharisma and Stentor
SIKE: Discovery, Structure, and Function
Single Strand Annealing
Site-specific Mutagenesis
Some Key Enzymes Used in Cloning
Spectroscopy of Damaged DNA
Synthesis of Modified Oligonucleotides
Synthetic Plasmid Biology
TANK-Binding Kinase 1 (TBK1): Structure, Function, and Regulation
Target-primed Mobilization Mechanisms
Target-site Selection
Tertiary Structure Domains, Folds and Motifs
The Complement System
Theoretical Aspects of Secondary Structure
Toll-Like Receptor 3: Structure and Function
Toll-Like Receptors: Evolution and Structure
Toll-Like Receptors: Pathogen Recognition and Signaling
Topoisomerases and Cancer
Transcription Factor Classes
Transduction of Environmental Signals by Prokaryotic Two Component Regulatory Systems
Transposable elements and plasmid genomes
Transposons
Types of DNA damage
Types of Electrophiles
Ultraviolet Light Damage
uORFs: an unusual cis element that regulates translation
Using Sequence Information to Assess Evolutionary Relationships
Using Sequence Information to Identify Motifs
V(D)J Recombination
Why Do Proteins Have Quaternary Structure: Non-allosteric Proteins.
Analysis of Damaged DNA
Artificial Chromosomes
Artificial Endonucleases for Genome Editing
Bacterial DNA Replicases
Bacteriophage and Viral Cloning Vectors
Base Intercalation
Bioactivation of Carcinogens
Bioinorganic Chemistry
Blue/White Selection
Characteristics of Enzymes and Cloning Vectors Used to Create Recombinant DNA
Chemical Biology of DNA Replication
Chemical Denaturation
Chemical Reaction Kinetics: Mathematical Underpinnings
Chromatin Remodeling during Homologous Recombination Repair in Saccharomyces Cerevisiae
Cis-Regulation of Eukaryotic Transcription
Classic Approaches to sequence determination
Classical and Alternative End Joining
Cloning Vector Compatibility
Computational methods in epigenetic research
Conjugative Transfer Systems and Classifying Plasmid Genomes
Conservative Site-specific Recombination
Control of Initiation in E.coli
Co-Transcriptional mRNA Processing in Eukaryotes
Crosslinking
Cycling of the Lagging Strand Replicase During Okazaki Fragment Synthesis
Depurination
Differential Equations and Chemical Master Equation Models for Gene Regulatory Networks
Direct Enzymatic Reversal of DNA Damage
Division of Labor
DNA Damage as a Therapeutic Strategy
DNA Damage by Endogenous Chemicals
DNA Methylation and Cancer
DNA Polymerase III Structure
DNA Repair
DNA Repair Polymerases
DNA Replication
DNA Topology and Topoisomerases
DnaA, DnaB, DnaC
DnaX Complex Composition and Assembly Within Cells
Double-strand Break Repair
Effects of adducts on Tm
Equilibria and Bifurcations in the Molecular Biosciences
Eukaryotic DNA Replicases
Evolution of Gene Regulatory Networks
Evolution of Plant Genomes
Exocyclic Adducts
Experimental Assessment of Secondary Structure by Circular Dichroism
Exploring Nuclear Lamin?Chromatin Interactions and Their Signalling Cascades
Expression Assessment
Fatty Acid Metabolism
Forces Maintaining the Stability of Tertiary Structure
Frequency of DNA Damage
Gene Regulation
Genes and Genomes: Structure
Genomic Imprinting
Genomic Imprinting in Mammals: Memories of Generations Past
Genomic Sequence and Structural Diversity in Plants
Genomic Signature Analysis to Predict Plasmid Host Range
Golgi Apparatus
Gyrase and Topoisomerase IV as Targets for Antibacterial Drugs
HDAC Inhibitors Entinostat and Suberoylanilide Hydroxamic Acid (SAHA): The Ray of Hope for Cancer Therapy
Helicase and Primase Interactions with Replisome Components and Accessory Factors
Helicase Mechanism of Action
Hereditary Breast and Ovarian Cancer and Poly(ADP-ribose) Polymerase Inhibition
Homologous Recombination in Lesion Bypass
Hydrolytic, Deamination, and Rearrangement Reactions of DNA Adducts
Immunology and the Immune Response
In Silico Approaches Towards Safe Targetting of Class I Histone Deacetylases
Inflammation and Host Response to Infection
Innate and Regulatory B cells
Innate Immunity
Ion Channels and Transporters
Kinetics of DNA Damage
Large, Theta-replicating Plasmids
Long-Term Genetic Silencing at Centromere and Telomeres
Mammalian Sugar Transporters
Many Bacteria Use a Special Mutagenic Pol III in Place of Pol V
Mass Spectrometry Approaches
Mathematical Modelling of Plasmid Dynamics
Mathematical Models in the Sciences
Mathematics of Fitting Scientific Data
Mechanism of Initiation Complex Formation
Mechanism of PCNA loading by RFC
Mechanisms of DNA Recombination
Meiotic Recombination
Metamobilomics ? The Plasmid Metagenome of Natural Environments
Methods for Plant Genome Annotation
Mismatch Repair
Mitochondrial Genomes
Mitochondrial Genomes in Alveolates
Mitochondrial Genomes in Amoebozoa
Mitochondrial Genomes in Fungi
Mitochondrial Genomes in Invertebrate Animals
Mitochondrial Genomes in Land Plants
Mitochondrial Genomes in Unicellular Relatives of Animals
Mitochondrial Genomes in Vertebrate Animals
Mitochondrial Genomes of Chromists (Stramenopiles, Haptophytes and Cryptophytes)
Mitochondrial Genomes of Excavata
Mitochondrial Genomes of Green, Red and Glaucophyte Algae
Mobile DNA: Mechanisms, Utility, and Consequences
Modelling Plasmid Regulatory Systems
Modes of Base Pairing
mRNA localization and localized translation
Naming and Annotation of plasmids
Natural Products that Damage DNA
NMR Approaches to Determine Protein Structure
NMR Basis For Biomolecular Structure (Theory)
Nucleotide Excision Repair
Obtaining Crystals
Oxidative Damage
Pattern Recognition Receptors: Evolution, Redundancy, and Cross Talk
PCNA Structure and Interactions with Partner Proteins
Peptide Pheromones and their Protein Receptors: Cellular Signaling in Gram-positive Bacteria
Phagocytosis
Plant Genome Sequencing Methods
Plant Genomes: From Sequence to Function Across Evolutionary Time
Plant Transposable Elements: Beyond Insertions and Interruptions
Plasmid Cloning Vectors
Plasmid Genomes, Introduction to
Plasmid Incompatibility
Plasmids as Secondary Chromosomes
Polyglutamine Folding Diseases
Polymerase Chain Reaction
Practical Screening for DNA Damage
Predictions from Sequence
Primary Structure
Prokaryotic Gene Regulation by Sigma Factors and RNA Polymerase
Prokaryotic Gene Regulation by Small RNAs
Protein Domain Structure Evolution
Rad51 and Dmc1 Recombinases
Reactive Oxygen Species
Recombination: Mechanisms, Pathways, and Applications
Recombineering
Regulation of cytoplasmic mRNA
Regulation of DSB Repair by Cell-cycle Signaling and the DNA Damage Response
Regulation of Genetic Element Mobility
Relevance of DNA Damage to Cancer
Repeating Sequences in Proteins: Their Identification and Structural/Functional Implications
Replication Origin of E. coli and the Mechanism of Initiation
Replicative DNA Helicases and Primases
Resolution of Inflammation
Restriction Endonucleases
RNA Interference
RNA Quality Control
RNA-induced chromatin remodeling
Role of Chromatin Remodeling and DNA Modification in Transcriptional Regulation
Roles of Post-translational Modifications in DNA Double Strand Break Repair
Rolling-circle Replicating Plasmids
Secondary Structure
Selection with Antibiotics
Selectivity of Chemicals for DNA Damage
Sequence Selectivity of DNA Damage
Signal Recognition in Lower Organisms: Light-Induced Control of Cell Movement in the Ciliates Blepharisma and Stentor
SIKE: Discovery, Structure, and Function
Single Strand Annealing
Site-specific Mutagenesis
Some Key Enzymes Used in Cloning
Spectroscopy of Damaged DNA
Synthesis of Modified Oligonucleotides
Synthetic Plasmid Biology
TANK-Binding Kinase 1 (TBK1): Structure, Function, and Regulation
Target-primed Mobilization Mechanisms
Target-site Selection
Tertiary Structure Domains, Folds and Motifs
The Complement System
Theoretical Aspects of Secondary Structure
Toll-Like Receptor 3: Structure and Function
Toll-Like Receptors: Evolution and Structure
Toll-Like Receptors: Pathogen Recognition and Signaling
Topoisomerases and Cancer
Transcription Factor Classes
Transduction of Environmental Signals by Prokaryotic Two Component Regulatory Systems
Transposable elements and plasmid genomes
Transposons
Types of DNA damage
Types of Electrophiles
Ultraviolet Light Damage
uORFs: an unusual cis element that regulates translation
Using Sequence Information to Assess Evolutionary Relationships
Using Sequence Information to Identify Motifs
V(D)J Recombination
Why Do Proteins Have Quaternary Structure: Non-allosteric Proteins.