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Intro; Foreword; Preface to the Series; Preface; Contents; 1 Wild Relatives of Rice: A Valuable Genetic Resource for Genomics and Breeding Research; Abstract; 1.1 Wild Relatives of Rice; 1.1.1 O. sativa Complex; 1.1.2 O. officinalis Complex; 1.1.3 O. ridleyi Complex; 1.1.4 O. meyeriana Complex; 1.1.5 Unclassified Complex; 1.1.6 Related Genera; 1.2 Exploration and Conservation of Wild Species of Oryza; 1.2.1 Exploration and Collection of Germplasm; 1.2.2 Genetic Erosion; 1.2.3 Conservation Strategy; 1.2.3.1 Ex Situ Conservation; 1.2.3.2 In Situ Conservation
1.3 Gene Transfer from Wild Species into Rice1.3.1 Strategies for Alien Gene Transfer; 1.3.2 Alien Introgression Lines (AILs) and Chromosomal Segmental Substitution Lines (CSSLs); 1.3.3 Introgression from AA Genome Species of O. sativa complex; 1.3.4 Introgression from Wild Species of O. officinalis Complex; 1.4 Characterization of Parental Genomes in Interspecific Hybrids, MAALs, and Homoeologous Pairing in Oryza Through GlSH; 1.5 Molecular Characterization of Alien Introgression; 1.6 Wild Species of Oryza: Genomics; 1.7 Utilization of Wild Relatives of Oryza: Future Priorities; References
2 Informatics of Wild Relatives of RiceAbstract; 2.1 Introduction; 2.2 Exploring Rice Diversity; 2.3 Sequencing Wild Relatives of Rice; 2.4 Database of Oryza Genus; 2.4.1 International Rice Information System; 2.4.2 Oryzabase; 2.4.3 Genetic Resources: Wild Rice Core Collection; 2.4.4 OryzaGenome; 2.4.5 Rice Genome Knowledgebase (RGKbase); 2.4.6 Rice Annotation Project Database (RAP-DB); 2.4.7 Oryza Map Alignment Project (OMAP); 2.4.8 Genomic Resources; 2.4.9 Advance Mapping Population and In Situ Conservation; 2.4.10 Gramene; 2.4.11 Genebank Project, NARO
2.4.12 RiTE-db: Database for Rice Repetitive Sequence and Transposable Elements2.5 Conclusion; References; 3 Evolutionary Relationships Among the Oryza Species; Abstract; 3.1 Introduction; 3.2 Origin and Domestication of Cultivated Rice Species; 3.2.1 Domestication of Asian Rice; 3.2.2 Domestication of African Rice; 3.3 Evolutionary Relationships Within Oryza Species Complexes; 3.3.1 Oryza sativa Species Complex; 3.3.2 Oryza officinalis Complex; 3.3.3 Oryza meyeriana Complex; 3.3.4 Oryza ridleyi Complex; 3.4 Challenges in Elucidating Oryza Evolutionary Relationships; References
4 Oryza alta SwollenAbstract; 4.1 Economic and Academic Importance; 4.2 Botanical Description and Distribution; 4.3 Cytogenetic Studies; 4.4 Genomics Studies; 4.5 Future Prospects; References; 5 Oryza australiensis Domin; Abstract; 5.1 Economic and Academic Importance; 5.2 Botanical Descriptions and Distribution; 5.3 Cytological Study; 5.4 Physiological Studies; 5.5 Molecular Mapping of Genes and QTLs; 5.6 Structural and Functional Genomic Resources Developed; 5.7 Requirement of Whole-Genome Sequencing; 5.8 Repetitive Sequences; 5.9 Organelle Genome; 5.10 Future Prospects; References
1.3 Gene Transfer from Wild Species into Rice1.3.1 Strategies for Alien Gene Transfer; 1.3.2 Alien Introgression Lines (AILs) and Chromosomal Segmental Substitution Lines (CSSLs); 1.3.3 Introgression from AA Genome Species of O. sativa complex; 1.3.4 Introgression from Wild Species of O. officinalis Complex; 1.4 Characterization of Parental Genomes in Interspecific Hybrids, MAALs, and Homoeologous Pairing in Oryza Through GlSH; 1.5 Molecular Characterization of Alien Introgression; 1.6 Wild Species of Oryza: Genomics; 1.7 Utilization of Wild Relatives of Oryza: Future Priorities; References
2 Informatics of Wild Relatives of RiceAbstract; 2.1 Introduction; 2.2 Exploring Rice Diversity; 2.3 Sequencing Wild Relatives of Rice; 2.4 Database of Oryza Genus; 2.4.1 International Rice Information System; 2.4.2 Oryzabase; 2.4.3 Genetic Resources: Wild Rice Core Collection; 2.4.4 OryzaGenome; 2.4.5 Rice Genome Knowledgebase (RGKbase); 2.4.6 Rice Annotation Project Database (RAP-DB); 2.4.7 Oryza Map Alignment Project (OMAP); 2.4.8 Genomic Resources; 2.4.9 Advance Mapping Population and In Situ Conservation; 2.4.10 Gramene; 2.4.11 Genebank Project, NARO
2.4.12 RiTE-db: Database for Rice Repetitive Sequence and Transposable Elements2.5 Conclusion; References; 3 Evolutionary Relationships Among the Oryza Species; Abstract; 3.1 Introduction; 3.2 Origin and Domestication of Cultivated Rice Species; 3.2.1 Domestication of Asian Rice; 3.2.2 Domestication of African Rice; 3.3 Evolutionary Relationships Within Oryza Species Complexes; 3.3.1 Oryza sativa Species Complex; 3.3.2 Oryza officinalis Complex; 3.3.3 Oryza meyeriana Complex; 3.3.4 Oryza ridleyi Complex; 3.4 Challenges in Elucidating Oryza Evolutionary Relationships; References
4 Oryza alta SwollenAbstract; 4.1 Economic and Academic Importance; 4.2 Botanical Description and Distribution; 4.3 Cytogenetic Studies; 4.4 Genomics Studies; 4.5 Future Prospects; References; 5 Oryza australiensis Domin; Abstract; 5.1 Economic and Academic Importance; 5.2 Botanical Descriptions and Distribution; 5.3 Cytological Study; 5.4 Physiological Studies; 5.5 Molecular Mapping of Genes and QTLs; 5.6 Structural and Functional Genomic Resources Developed; 5.7 Requirement of Whole-Genome Sequencing; 5.8 Repetitive Sequences; 5.9 Organelle Genome; 5.10 Future Prospects; References