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Machine generated contents note: 1. Introduction; 2. Elements of probability and combinatorial theory; 3. From classical to quantum mechanics, and back; 4. Ensemble theory; 5. Canonical ensemble; 6. Fluctuations and other ensembles; 7. Molecules; 8. Non-ideal gases; 9. Liquids and crystals; 10. Beyond pure, single-component systems; 11. Polymers - Brownian dynamics; 12. Non-equilibrium thermodynamics; 13. Stochastic processes; 14. Molecular simulations; 15. Monte Carlo simulations; 16. Molecular dynamics simulations; 17. Analyzing simulation results; 18. Simulations of stochastic reaction kinetics.