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SECTION I: Principles and Tools of Respiratory Microbiome Investigation
Conceptual Framework and Hypothesis Testing
Study Design and Sampling Considerations
Laboratory Platforms to Study the Microbiome
Analysis and Reporting of Microbiome Data
SECTION II: Applications in the Study of Specific Diseases
Chronic Rhinosinusitis /Allergic Rhinitis
Bronchiolitis, Viral Infection and Pediatric Asthma Risk
Asthma Pheotype
Cystic Fibrosis
Bronchiectasis (non-CF)
COPD
Idiopathic Pulmonary Fibrosis
Lung Transplantation and Immune Suppression
The Future: Knowledge gaps and priorities.

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